Chapter 3.12 References and further reading

Aime, M.C., Matheny, P.B., Henk, D.A., Frieders, E.M., Nilsson, R.H., Piepenbring, M., McLaughlin, D.J., Szabo, L.J., Begerow, D., Sampaio, J.P., Bauer, R., Weiss, M., Oberwinkler, F. & Hibbett, D. (2006). An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia, 98: 896-905. DOI: https://doi.org/10.3852/mycologia.98.6.896.

Aime, M.C., Toome, M. & Mclaughlin, D.J. (2014). Pucciniomycotina. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 271-294. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2.  DOI: https://doi.org/10.1007/978-3-642-55318-9_10. VIEW on Amazon.

Anslan, S., Nilsson, R.H., Wurzbacher, C., Baldrian, P., Tedersoo, L. & Bahram, M. (2018) Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. PeerJ Preprints 6: article e27019v2. DOI: https://doi.org/10.7287/peerj.preprints.27019v2.

Badotti, F., de Oliveira, F.S., Garcia, C.F., Vaz, A.B.M., Fonseca, P.L.C., Nahum, L.A., Oliveira, G. & Góes-Neto, A. (2017). Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi). BMC Microbiology, 17: 42 (12 pages). DOI: https://doi.org/10.1186/s12866-017-0958-x.

Beakes, G.W., Honda, D. & Thines, M. (2014). Systematics of the Straminipila: Labyrinthulomycota, Hyphochytriomycota, and Oomycota. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp 39-97. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_3. VIEW on Amazon

Begerow, D., Schäfer, A.M., Kellner, R., Yurkov, A., Kemler, M., Oberwinkler, F. & Bauer, R. (2014). Ustilaginomycotina. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 295-329. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_11. VIEW on Amazon

Begerow, D., Stoll, M. & Bauer, R. (2006). A phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data. Mycologia, 98: 906-916. DOI: https://doi.org/10.3852/mycologia.98.6.906.

Beimforde, C., Feldberg, K., Nylinder, S., Rikkinen, J., Tuovila, H., Dörfelt, H., Gube, M., Jackson, D.J., Reitner, J., Seyfullah, L.J. & Schmidt, A.R. (2014). Estimating the Phanerozoic history of the Ascomycota lineages: combining fossil and molecular data. Molecular Phylogenetics and Evolution, 78: 386-398. DOI: https://doi.org/10.1016/j.ympev.2014.04.024.

Benny, G.L., Humber, R.A. & Voigt, K. (2014). Zygomycetous fungi: phylum Entomophthoromycota and subphyla Kickxellomycotina, Mortierellomycotina, Mucoromycotina, and Zoopagomycotina. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 209-250. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_8. VIEW on Amazon.

Binder, M. & Hibbett, D.S. (2006). Molecular systematics and biological diversification of Boletales. Mycologia, 98: 971-981. DOI: https://doi.org/10.3852/mycologia.98.6.971.

Blackwell, M., Hibbett, D.S., Taylor, J.W. & Spatafora, J.W. (2006). Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha). Mycologia, 98: 829-837. DOI: https://doi.org/10.3852/mycologia.98.6.829.

Bonfante, P. & Desirò, A. (2017). Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota. The ISME Journal, 11: 1727-1735. DOI: https://doi.org/10.1038/ismej.2017.21.

Bonfante, P. & Venice, F. (2020). Mucoromycota: going to the roots of plant-interacting fungi. Fungal Biology Reviews, in press. DOI: https://doi.org/10.1016/j.fbr.2019.12.003.

Bracker, C.E. (1968). The ultrastructure and development of sporangia in Gilbertella persicaria. Mycologia, 60: 1016-1067. DOI: https://doi.org/http://dx.doi.org/10.2307/3757290.

Bruns, T.D., Corradi, N., Redecker, D., Taylor, J.W. & Öpik, M. (2017). Glomeromycotina: what is a species and why should we care? New Phytologist, 2017: Viewpoint Early View (online version of record before inclusion in an issue), article 0028-646X. DOI: https://doi.org/10.1111/nph.14913.

Bulman, S. & Braselton, J.P. (2014). Rhizaria: Phytomyxea. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 99-112. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_4. VIEW on Amazon.

Cai, L., Giraud, T., Zhang, N. Begerow, D., Cai, G. & Shivas, R.G. (2011). The evolution of species concepts and species recognition criteria in plant pathogenic fungi. Fungal Diversity, 50: 121. DOI: https://doi.org/10.1007/s13225-011-0127-8.

Carlile, M. J., Watkinson, S. C. & Gooday, G. W. (2001). The Fungi, 2nd edn. London: Academic Press. ISBN 0127384464. VIEW on Amazon.

Castaño, C., Berlin, A., Brandström Durling, M., Ihrmark, K., Lindahl, B.D., Stenlid, J., Clemmensen, K.E. & Olson, Å. (2020). Optimized metabarcoding with Pacific Biosciences enables semi-quantitative analysis of fungal communities. New Phytologist, online version before inclusion in an issue. DOI: https://doi.org/10.1111/nph.16731.

Cavalier-Smith, T. (2018). Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences. Protoplasma, 255: 297-357. DOI: https://doi.org/10.1007/s00709-017-1147-3.

Corradi, N. & Brachmann, A. (2017). Fungal mating in the most widespread plant symbionts? Trends in Plant Science, 22: 175-183. DOI: https://doi.org/10.1016/j.tplants.2016.10.010.

Costa, F.O. & Carvalho, G.R. (2007). The Barcode of Life Initiative: synopsis and prospective societal impacts of DNA barcoding of Fish. Genomics, Society and Policy, 3: 29-40. DOI: https://doi.org/10.1186/1746-5354-3-2-29.

Didier, E.S., Becnel, J.J., Kent, M.L., Sanders, J.L. & Weiss, L.M. (2014). Microsporidia. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 115-140. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_5. VIEW on Amazon.

Edwards, J.E., Forster, R.J., Callaghan, T.M., Dollhofer, V., Dagar, S.S., Cheng, Y., Chang, J., Kittelmann, S., Fliegerova, K., Puniya, A.K., Henske, J.K., Gilmore, S.P., O’Malley, M.A., Griffith, G.W. & Smidt, H. (2017). PCR and omics based techniques to study the diversity, ecology and biology of anaerobic fungi: insights, challenges and opportunities. Frontiers in Microbiology, 8: 1657 (27 pages). DOI: https://doi.org/10.3389/fmicb.2017.01657.

Gazis, R., Miadlikowska, J., Lutzoni, F., Arnold, A.E. & Chaverri, P. (2012). Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of pezizomycotina: Xylonomycetes. Molecular Phylogenetics and Evolution, 65: 294-304. DOI: https://doi.org/10.1016/j.ympev.2012.06.019.

Geiser, D.M., Lobuglio, K.F. & Gueidan, C. (2015). Pezizomycotina: Eurotiomycetes. In: The Mycota Systematics and Evolution, VII part B: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 121-141. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-662-46010-8. DOI: https://doi.org/10.1007/978-3-662-46011-5_5. VIEW on Amazon.

Gleason, F.H., Kagami, M., LeFevre, E. & Sime-Ngando, T. (2008). The ecology of chytrids in aquatic ecosystems: roles in food web dynamics. Fungal Biology Reviews, 22: 17-25. DOI: https://doi.org/10.1016/j.fbr.2008.02.001.

Gruninger, R.J., Puniya, A.K., Callaghan, A.M., Edwards, J.E., Youssef, N., Dagar, S.S., Fliegerova, K., Griffith, G.W., Forster, R., Tsang, A., McAllister, T. & Elshahed, M.S. (2014). Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. FEMS Microbiology Ecology, 90: 1–17. DOI: https://doi.org/10.1111/1574-6941.12383.

Gueidan, C., Hill, D.J., Miadlikowska, J. & Lutzoni, F. (2015). Pezizomycotina: Lecanoromycetes. In: The Mycota Systematics and Evolution, VII part B: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 89-120. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-662-46010-8. DOI: https://doi.org/10.1007/978-3-662-46011-5_4. VIEW on Amazon.

Halary, S., Malik, S.B., Lildhar, L., Slamovits, C.H., Hijri, M. & Corradi, N. (2011). Conserved meiotic machinery in Glomus spp., a putatively ancient asexual fungal lineage. Genome Biology and Evolution, 3: 950-958. DOI: https://doi.org/10.1093/gbe/evr089.

Halary, S., Daubois, L., Terrat, Y., Ellenberger, S., Wöstemeyer, J. & Hijri, M. (2013). Mating type gene homologues and putative sex pheromone-sensing pathway in arbuscular mycorrhizal fungi, a presumably asexual plant root symbiont. PLoS ONE, 8 (11): e80729. DOI: https://doi.org/10.1371/journal.pone.0080729.

Hawksworth, D. L. & Lücking, R. (2017). Fungal diversity revisited: 2.2 to 3.8 million species. In: The Fungal Kingdom, (eds J. Heitman, B. Howlett, P. Crous, E. Stukenbrock, T. James & N. Gow), pp. 79-95. Washington, DC: ASM Press. DOI: https://doi.org/10.1128/microbiolspec.FUNK-0052-2016.

He, M.-Q., Zhao, R.-L., Hyde, K.D., Begerow, D., Kemler, M. and 65 others. (2019). Notes, outline and divergence times of Basidiomycota. Fungal Diversity, 99: 105-367. DOI: https://doi.org/10.1007/s13225-019-00435-4. [Open Access PDF download].

Hibbett, D.S. (2006). A phylogenetic overview of the Agaricomycotina. Mycologia, 98: 917-925. DOI: https://doi.org/10.3852/mycologia.98.6.917.

Hibbett, D.S., Bauer, R., Binder, M., Giachini, A.J., Hosaka, K., Justo, A., Larsson, E., Larsson, K.H., Lawrey, J.D., Miettinen, O., Nagy, L.G., Nilsson, R.H., Weiss, M. & Thorn R.G. (2014). Agaricomycetes. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 373- 429. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_14. VIEW on Amazon.

Hibbett, D.S., Binder, M., Bischoff, J.F., Blackwell, M., Cannon, P.F. and 62 others (2007). A higher-level phylogenetic classification of the Fungi. Mycological Research, 111: 509-547. DOI: https://doi.org/10.1016/j.mycres.2007.03.004.

Hollingsworth, P.M. (2007). DNA barcoding: potential users. Genomics, Society and Policy, 3: 44-47. DOI: https://doi.org/10.1186/1746-5354-3-2-44.

Hosaka, K., Bates, S.T., Beever, R.E., Castellano, M.A., Colgan, W., III, Dominguez, L.S., Nouhra, E.R., Geml, J., Giachini, A.J., Kenney, S.R., Simpson, N.B., Spatafora, J.W. & Trappe, J.M. (2006). Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders. Mycologia, 98: 949-959. DOI: https://doi.org/10.3852/mycologia.98.6.949.

Hyde, K.D., Maharachchikumbura, S.S.N., Hongsanan, S., Samarakoon, M.C., Lücking, R. and 9 others (2017). The ranking of fungi: a tribute to David L. Hawksworth on his 70th birthday. Fungal Diversity, 84: 1-23. DOI: https://doi.org/10.1007/s13225-017-0383-3.

James, T.Y., Letcher, P.M., Longcore, J.E., Mozley-Standridge, S.E., Porter, D., Powell, M.J., Griffith, G.W. & Vilgalys, R. (2006). A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia, 98: 860-871. DOI: https://doi.org/10.3852/mycologia.98.6.860.

James, T.Y., Porter, T.M. & Martin, W.W. (2014). Blastocladiomycota. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 177-208. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_7.

Jones, M.D.M., Richards, T.A., Hawksworth, D.L., Bass, D. (2011). Validation and justification of the phylum name Cryptomycota phyl. nov. IMA Fungus, 2: 173-175. DOI: https://doi.org/10.5598/imafungus.2011.02.02.08.

Jordan, E.G., Birkett, J.A. & Trinci, A.P.J. (1980). Effect of temperature on nucleolar size in Basidiobolus ranarum. Transactions of the British Mycological Society, 74: 214-217. DOI: https://doi.org/10.1016/S0007-1536(80)80035-0.

Kerrigan, R.W. (2016). Agaricus of North America. Memoirs of the New York Botanical Garden, volume 114. NY, USA: NYBG Press. 592 pp. ISBN: 978-0-89327-536-5. VIEW on publisher's website.

Kerrigan, R.W., Challen, M.P. & Burton, K.S. (2013). Agaricus bisporus genome sequence: a commentary. Fungal Genetics and Biology, 55: 2-5. DOI: https://doi.org/10.1016/j.fgb.2013.03.002.

Kück, U. & Pöggeler, S. (2009). Cryptic sex in fungi. Fungal Biology Reviews, 23: 86-90. DOI: https://doi.org/10.1016/j.fbr.2009.10.004.

Kurtzman, C.P. & Sugiyama, J. (2015). Saccharomycotina and Taphrinomycotina: the yeasts and yeastlike fungi of the Ascomycota. In: The Mycota Systematics and Evolution, VII part B: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 3-33. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-662-46010-8. DOI: https://doi.org/10.1007/978-3-662-46011-5_1. VIEW on Amazon.

Landy, E.T. & Jones, G.M. (2006). What is the fungal diversity of marine ecosystems in Europe? Mycologist, 20: 15–21. DOI: https://doi.org/10.1016/j.mycol.2005.11.010.

Larsson, K.-H., Parmasto, E., Fischer, M., Langer, E., Nakasone, K.K. & Redhead, S.A. (2006). Hymenochaetales: a molecular phylogeny for the hymenochaetoid clade. Mycologia, 98: 926-936. DOI: https://doi.org/10.3852/mycologia.98.6.926.

Lessie, P.E. & Lovett, J.S. (1968). Ultrastructural changes during sporangium formation and zoospore differentiation in Blastocladiella emersonii. American Journal of Botany, 55: 220-236. Stable URL: http://links.jstor.org/sici?sici=0002­9122%28196802%2955%3A2%3C220%3AUCDSFA%3E2.0.CO%3B2-I.

Lutzoni, F., Nowak, M., Alfaro, M., Reeb, V., Miadlikowska, J. and 9 others. (2018). Contemporaneous radiations of fungi and plants linked to symbiosis. Nature Communications, 9: 5451. DOI: https://doi.org/10.1038/s41467-018-07849-9.

Matheny, P.B., Curtis, J.M., Hofstetter, V., Aime, M.C., Moncalvo, J.-M., Ge, Z.-W., Yang, Z.-L., Slot, J.C., Ammirati, J.F., Baroni, T.J., Bougher, N.L., Hughes, K.W., Lodge, D.J., Kerrigan, R.W., Seidl, M.T., Aanen, D.K., DeNitis, M., Daniele, G.M., Desjardin, D.E., Kropp, B.R., Norvell, L.L., Parker, A., Vellinga, E.C., Vilgalys, R. & Hibbett, D.S. (2006). Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia, 98: 982-995. DOI: https://doi.org/10.3852/mycologia.98.6.982.

Mayden, R.L. (1997). A hierarchy of species concepts: the denouement in the saga of the species problem. In: Species: The Units of Biodiversity (M.F. Claridge, H.A. Dawah & M.R. Wilson, eds), pp. 381-424. ISBN-10: 0412631202, ISBN-13: 978-0412631207. London: Chapman and Hall. VIEW on Amazon.

Miller, S.L., Larsson, E., Larsson, K.-H., Verbeken, A. & Nuytinck, J. (2006). Perspectives in the new Russulales. Mycologia, 98: 960-970. DOI: https://doi.org/10.3852/mycologia.98.6.960.

Moncalvo, J.-M., Nilsson, R.H., Koster, B., Dunham, S.M., Bernauer, T., Matheny, P.B., Porter, T.M., Margaritescu, S., Weiss, M., Garnica, S., Danell, E., Langer, G., Langer, E., Larsson, E., Larsson, K.-H. & Vilgalys, R. (2006). The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods. Mycologia, 98: 937-948. DOI: https://doi.org/10.3852/mycologia.98.6.937.

Moore, D. (1998). Fungal Morphogenesis. New York: Cambridge University Press. 469 pp. Chapter 3 Metabolism and biochemistry of hyphal systems. ISBN-10: 0521552958, ISBN-13: 978-0521552950. VIEW on Amazon.

Moore, D. (2000). Slayers, Saviors, Servants and Sex. An exposé of Kingdom Fungi. New York: Springer Verlag, Inc. 176 pp. Chapter 3 Decay and Degradation. ISBN-10: 0387951016, ISBN-13: 978-0387951010. VIEW on Amazon. VIEW on publisher's website. CLICK HERE to download full-text PDF.

Moore, D. & Novak Frazer, L. (2002). Essential Fungal Genetics. New York: Springer-Verlag Inc. ISBN-10: 0387953671, ISBN-13: 978-0387953670. VIEW on Amazon.

Oberwinkler, F. (2014). Dacrymycetes. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 357-372. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_13. VIEW on Amazon

Oehl, F., Sieverding, E., Palenzuela, J., Ineichen, K. & Alves da Silva, G. (2011). Advances in Glomeromycota taxonomy and classification. IMA Fungus, 2: 191-199. DOI: https://doi.org/10.5598/imafungus.2011.02.02.10.

Padamsee, M. Kumar, T.K.A., Riley, R., Binder, M., Boyd, A., Calvo, A.M., Furukawa, K., Hesse, C., Hohmann, S., James, T.Y., Labutti, K., Lapidus, A., Lindquist, E., Lucas, S., Miller, K., Shantappa, S., Grigoriev, I.V., Hibbett, D.S., McLaughlin, D.J., Spatafora, J.W. & Aime, M.C. (2012). The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction. Fungal Genetics and Biology, 49: 217-226. DOI: https://doi.org/10.1016/j.fgb.2012.01.007.

Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D. and 16 others. (2018). Genome evolution across 1,011 Saccharomyces cerevisiae isolates. Nature, 556: 339-344. DOI: https://doi.org/10.1038/s41586-018-0030-5.

Pfister, D.H. (2015). Pezizomycotina: Pezizomycetes, Orbiliomycetes. In: The Mycota Systematics and Evolution, VII part B: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 35-55. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-662-46010-8. DOI: https://doi.org/10.1007/978-3-662-46011-5_2. VIEW on Amazon.

Pommerville, J.C., Strickland, J.B. & Harding, K.E. (1990). Pheromone interactions and ionic communication in gametes of aquatic fungus Allomyces macrogynus. Journal of Chemical Ecology, 16: 121-131. DOI: https://doi.org/10.1007/BF01021274.

Powell, M.J. & Letcher, P.M. (2014). Chytridiomycota, Monoblepharidomycota, and Neocallimastigomycota. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 141-176. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_6. VIEW on Amazon

Prieto, M., Baloch, E., Tehler, A. & Wedin, M. (2013), Mazaedium evolution in the Ascomycota (Fungi) and the classification of mazaediate groups of formerly unclear relationship. Cladistics, 29: 296-308. DOI: https://doi.org/10.1111/j.1096-0031.2012.00429.x.

Redecker, D. & Raab, P. (2006). Phylogeny of the Glomeromycota (arbuscular mycorrhizal fungi): recent developments and new gene markers. Mycologia, 98: 885-895. DOI: https://doi.org/10.3852/mycologia.98.6.885.

Redecker, D. & Schüßler, A. (2014). Glomeromycota. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 251-270. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_9. VIEW on Amazon

Redecker, D., Schüßler, A., Stockinger, H., Stürmer, S.L., Morton, J.B. & Walker, C. (2013). An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota). Mycorrhiza, 23: 515-531. DOI: https://doi.org/10.1007/s00572-013-0486-y.

Reeves, F. Jr. (1967). The fine structure of ascospore formation in Pyronema domesticum. Mycologia, 59: 1018-1033. DOI: https://doi.org/10.2307/3757272.

Riley, R., Salamov, A.A., Brown, D.W., Nagy, L.G., Floudas, D. et al. (2014). Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proceedings of the National Academy of Sciences the United States of America, 111: 9923-9928. DOI: https://doi.org/10.1073/pnas.1400592111.

Rossman, A.Y. & Palm, M.E. (2006). Why are Phytophthora and other Oomycota not true Fungi? Outlooks on Pest Management, 17: 217-219. URL: https://www.apsnet.org/edcenter/intropp/PathogenGroups/Pages/Oomycetes.aspx.

Runnel, K., Drenkhan, R., Adamson, K., Lõhmus, P., Rosenvald, K., Rosenvald, R., Rähn, E. & Tedersoo, L. (2021). The factors and scales shaping fungal assemblages in fallen spruce trunks: A DNA metabarcoding study. Forest Ecology and Management, 495: article number 119381. DOI: https://doi.org/10.1016/j.foreco.2021.119381.

Schoch, C. & Grube, M. (2015). Pezizomycotina: Dothideomycetes and Arthoniomycetes. In: The Mycota Systematics and Evolution, VII part B: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 143-176. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-662-46010-8. DOI: https://doi.org/10.1007/978-3-662-46011-5_6.

Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., Chen, W. & the Fungal Barcoding Consortium. (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America, 109: 6241-6246. DOI: https://doi.org/10.1073/pnas.1117018109.

Sexton, A.C. & Howlett, B.J. (2006). Parallels in fungal pathogenesis on plant and animal hosts. Eukaryotic Cell, 5: 1941-1949. DOI: https://doi.org/10.1128/EC.00277-06.

Sieber, T.N. (2007). Endophytic fungi in forest trees: are they mutualists? Fungal Biology Reviews, 21: 75-89. DOI: https://doi.org/10.1016/j.fbr.2007.05.004.

Spatafora, J.W., Chang, Y., Benny, G.L., Lazarus, K., Smith, M.E., Berbee, M.L., Bonito, G., Corradi, N., Grigoriev, I., Gryganskyi, A., James, T.Y. O’Donnell, K., Roberson, R.W., Taylor, T.N., Uehling, J., Vilgalys, R., White, M.M. & Stajich, J.E. (2016). A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia, 108: 1028-1046. DOI: https://doi.org/10.3852/16-042.

Spatafora, J.W., Sung, G.-H., Johnson, D., Hesse, C., O’Rourke, B., Serdani, M., Spotts, R., Lutzoni, F., Hofstetter, V., Miadlikowska, J., Reeb, V., Gueidan, C., Fraker, E., Lumbsch, T., Lucking, R., Schmitt, I., Hosaka, K., Aptroot, A., Roux, C., Miller, A.N., Geiser, D.M., Hafellner, J., Hestmark, G., Arnold, A.E., Budel, B., Rauhut, A., Hewitt, D., Untereiner, W.A., Cole, M.S., Scheidegger, C., Schultz, M., Sipman, H. & Schoch, C.L. (2006). A five-gene phylogeny of Pezizomycotina. Mycologia, 98: 1018-1028. DOI: https://doi.org/10.3852/mycologia.98.6.1018.

Stephenson, S.L. (2014). Excavata: Acrasiomycota; Amoebozoa: Dictyosteliomycota, Myxomycota. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 21-38. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_2.

Sugiyama, J., Hosaka, K. & Suh, S.-O. (2006). Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas. Mycologia, 98: 996-1005. DOI: https://doi.org/10.3852/mycologia.98.6.996.

Suh, S.-O., Blackwell, M., Kurtzman, C.P. & Lachance, M.-A. (2006). Phylogenetics of Saccharomycetales, the ascomycete yeasts. Mycologia, 98: 1006-1017. DOI: https://doi.org/10.3852/mycologia.98.6.1006.

Tang, N., San Clemente, H., Roy, S., Bécard, G., Zhao, B. & Roux, C. (2016). A survey of the gene repertoire of Gigaspora rosea unravels conserved features among Glomeromycota for obligate biotrophy. Frontiers in Microbiology, 7: 233. DOI: https://doi.org/10.3389/fmicb.2016.00233.

Tehler, A., Little, D.P. & Farris, J.S. (2003). The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi. Mycological Research, 107: 901-916. DOI: https://doi.org/10.1017/S0953756203008128.

Trinci, A.P.J., Davies, D.R., Gull, K., Lawrence, M.I., Bonde Nielsen, B., Rickers, A. & Theodorou, M.K. (1994). Anaerobic fungi in herbivorous animals. Mycological Research, 98: 129-152. DOI: https://doi.org/10.1016/S0953-7562(09)80178-0.

Truong, C., Mujic, A.B., Healy, R., Kuhar, F., Furci, G., Torres, D., Niskanen, T., Sandoval-Leiva, P.A., Fernández, N., Escobar, J.M., Moretto, A., Palfner, G., Pfister, D., Nouhra, E., Swenie, R., Sánchez-García, M., Matheny, P.B. & Smith, M.E. (2017). How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity. New Phytologist, 214: 913–919. DOI: https://doi.org/10.1111/nph.14509.

Unuk Nahberger, T., Kraigher, H. & Grebenc, T. (2020). PCR primers comparisons for a successful Tuber spp. DNA region amplification in routine identifications. Folia biologica et geologica, 61: 229-238. Open access, DOI: https://doi.org/10.3986/fbg0076.

van der Giezen, M. (2002). Strange fungi with even stranger insides. Mycologist, 16: 129-131. DOI: https://doi.org/10.1017/s0269915x02003051.

Varga, T., Krizsan, K., Földi, C., Dima, B., Sanchez-Garcia, M. and 15 others. (2019). Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecology & Evolution, 3: 668–678. DOI: https://doi.org/10.1038/s41559-019-0834-1.

Venice, F., Ghignone, S., Salvioli di Fossalunga, A., Amselem, J., Novero, M. and eight others. (2019). At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions. Environmental Microbiology, DOI: https://doi.org/10.1111/1462-2920.14827.

Wang, X., Liu, X. & Groenewald, J.Z. (2017). Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China. Antonie van Leeuwenhoek, 110: 87-103. DOI: https://doi.org/10.1007/s10482-016-0779-1.

Webster, J. & Weber, R. (2007). Introduction to Fungi, 3rd ed. Cambridge, UK: Cambridge University Press. ISBN-10: 0521014832, ISBN-13: 978-0521014830. VIEW on Amazon.

Weiss, M., Bauer, R., Sampaio, J.P., Oberwinkler, F. (2014). Tremellomycetes and related groups. In: The Mycota Systematics and Evolution, VII part A: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 331-355. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-642-55317-2. DOI: https://doi.org/10.1007/978-3-642-55318-9_12.

White, M.M., James, T.Y., O’Donnell, K., Cafaro, M.J., Tanabe, Y. & Sugiyama, J. (2006). Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia, 98: 872-884. DOI: https://doi.org/10.3852/mycologia.98.6.872.

Zajc, J., Jančič, S., Zalar, P. & Gunde-Cimerman, N. (2016). Wallemia. In: Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi, (eds R.R.M. Paterson &‎ N. Lima), pp. 569-581. Boca Raton, FL, USA: CRC Press. ISBN-10: 1466559861, ISBN-13: 978-1466559868. VIEW on Amazon.

Zajc, J., Liu, Y., Dai, W., Yang, Z., Hu, J., Gostinčar, C. & Gunde-Cimerman, N. (2013). Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent. BMC Genomics, 14: 617. DOI: https://doi.org/10.1186/1471-2164-14-617.

Zhang, N. & Wang, Z. (2015). Pezizomycotina: Sordariomycetes and Leotiomycetes. In: The Mycota Systematics and Evolution, VII part B: (2nd ed.), (eds D.J. McLaughlin & J.W. Spatafora), pp. 57-88. Berlin, Heidelberg: Springer-Verlag. ISBN 978-3-662-46010-8. DOI: https://doi.org/10.1007/978-3-662-46011-5_3. VIEW on Amazon.

Updated June, 2021